PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g001010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 273aa    MW: 31351.2 Da    PI: 6.4193
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g001010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.31.3e-22111171259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg+ WrKYGqK++k+s++ rsYY+C+++   +C++kk+v++ +++p +  +tY g H+++
  Csa13g001010.1 111 HDGFLWRKYGQKQIKESDHQRSYYKCAYTkdqNCEAKKQVQKIQHNPPLYSTTYFGYHTCQ 171
                     6**************************988899**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-23102171IPR003657WRKY domain
PROSITE profilePS5081120.013105173IPR003657WRKY domain
SuperFamilySSF1182902.09E-22106172IPR003657WRKY domain
SMARTSM007744.3E-33110172IPR003657WRKY domain
PfamPF031063.2E-22112171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MNSCQQKAME KLLHGRGCAN QLLVMDHTES DSSMEREDLA KSVLHCFSDA LSILIDTNHE  60
HQDDQSNNSS PQDSSPVLES SRKPLHKRGR KASMAESSDY HRHESSTPIY HDGFLWRKYG  120
QKQIKESDHQ RSYYKCAYTK DQNCEAKKQV QKIQHNPPLY STTYFGYHTC QLHQAYATFP  180
IDTSDPEDHE GSHMIRFGHP NTSFFSSSST NSLCQHQSQN QNQNQNHIKD EYMTTPDKAE  240
EWSPSQWMSS EVAHAVEAFE FNPFWTSHDL SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-141121711069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g001010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937300.0AB493730.1 Arabidopsis thaliana At5g01900 mRNA for hypothetical protein, partial cds, clone: RAAt5g01900.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451923.10.0PREDICTED: probable WRKY transcription factor 62
SwissprotQ9LZV61e-172WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLR0ET481e-174R0ET48_9BRAS; Uncharacterized protein
STRINGXP_010451923.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-151WRKY DNA-binding protein 62