PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g062990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 346aa    MW: 38016.9 Da    PI: 6.6181
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g062990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573119.71.5e-37138228297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      fqrlwse+Dei+lLqG+idfka++g+sp+dd+++f++++k++isf+vsk q+ +Kir+LKkK+  k+kk     + s++++hd+k+++l+k iW
  Csa12g062990.1 138 PFQRLWSEDDEISLLQGMIDFKAEKGTSPYDDMNGFFDMAKNNISFDVSKIQFGDKIRSLKKKYFAKQKK-----KGSLESSHDKKCLGLAKYIW 227
                     69******************************************************************99.....67999*************** PP

          DUF573  97 g 97 
                      
  Csa12g062990.1 228 V 228
                     6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.0E-28139227IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAKKVLNPLE DPPTASSSGD EEVETSSGEE DVKQTSDSSF EEDDPKDPAT SKTLKTTPAN  60
APSTESEGSE SESEPSPEKP VAVVTRLTTK PKKKEGNEST APKPGKKRAS EAGTTSKDMH  120
VKKAKKAKKV SGDDEKKPFQ RLWSEDDEIS LLQGMIDFKA EKGTSPYDDM NGFFDMAKNN  180
ISFDVSKIQF GDKIRSLKKK YFAKQKKKGS LESSHDKKCL GLAKYIWVSD GMALESAVKL  240
ANGKLKKVES LKSGGDDNVG EEKEVVIPRG DSESSNLFEK SFLVRTIAGL GVDEFSVKEK  300
WSKVSVETKN RIEEKLKLVE AKEYELLRLK SDILKEVAYV MTQGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450191.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLR0G5T31e-115R0G5T3_9BRAS; Uncharacterized protein
STRINGAT1G44810.11e-104(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44810.12e-90DNA-binding storekeeper protein-related transcriptional regulator