PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g062860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 325aa    MW: 37478.8 Da    PI: 6.4119
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g062860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-16949343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    +en+  r +t+ +Rr+g+l K +ELS+LCd+ v++iifs++
  Csa12g062860.1  9 VENDKARAITLKRRREGLLRKVKELSILCDIWVCLIIFSPN 49
                    69*************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.778149IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-7121IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-16158IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-20291IPR002100Transcription factor, MADS-box
CDDcd002661.46E-25383No hitNo description
PfamPF003194.1E-15949IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-72136IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-73657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSKLKLAWVE NDKARAITLK RRREGLLRKV KELSILCDIW VCLIIFSPNE VEPVVWPSAE  60
RARDLLNDFF ALPKFEQKKK ETSVESFLKK KTEAVHKQLM KSNKKTKEYV TDELMLHLQH  120
GRGIEDLNLT EIYALLSYSK EKIILCRKKF NFMQFSPLRD PLVLPIEVQV KQLTITTNDS  180
FVGGGQDDDK TEFDPKPLEH VSHCPYQGSS SNGNASLEME PIYPFATCFH GLVGSASQQL  240
QHRNMNNNPI MAMNQPKQYL FDFMNREQEI EEEKNNINTQ IYRGNNGIAT NDDVRQEPPL  300
SETTVREDNV NLMSLDIDRD WLSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g062860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451565.10.0PREDICTED: agamous-like MADS-box protein AGL92
TrEMBLR0HWZ51e-134R0HWZ5_9BRAS; Uncharacterized protein
STRINGXP_010451565.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-103AGAMOUS-like 48