PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g100300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 447aa    MW: 46561.8 Da    PI: 6.7638
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g100300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.89.8e-38240299362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++ +kcprC+st+tkfCyynnyslsqPryfCk+CrryW kGG+lrn+PvGgg+rknkk s
  Csa11g100300.1 240 DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWPKGGTLRNIPVGGGCRKNKKPS 299
                     6789*****************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074780.00489108IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-34228293IPR003851Zinc finger, Dof-type
PfamPF027013.8E-31241297IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.202243297IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
SSKGNYNNGC EAKSEVVLSL DWQQDQCYSN GGNGGVGKSD GGGYINGLAE SSGGSMLDSS  60
TTSPSAADIL AACSTRPQAS AVAVAAAALM DGGRRLRPPH DHPQKSSKGN YNNGCEAKSE  120
VVLSLDWQQD QCYSNGGNGG VGKSDGGGYI NGLAESSGGS MLDSSTTSPS AADILAACST  180
RPQASAEAES SGGSMLDSST TSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD  240
HPQKCPRCES THTKFCYYNN YSLSQPRYFC KTCRRYWPKG GTLRNIPVGG GCRKNKKPSS  300
SNSSSSTSSG KKPSNIVTNN TTDLMALAHS HQNYQNSPLG FLILSSRPTD FLDSKYDLMG  360
VNNDNDLVMA DHGSNGDHHH HITWGNYNNG CEAKSEVVLS LDWQQDQCYS NGGGNGGVGK  420
SDGGGYINGL GSSWNGLMNG YIWILD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g100300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0090530.0AB009053.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.
GenBankAK2289920.0AK228992.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL16-29-O12.
GenBankBT0204670.0BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBankBT0205760.0BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866523.12e-99dof zinc finger protein DOF5.6
SwissprotQ9FM033e-88DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBLD7MNC94e-98D7MNC9_ARALL; Uncharacterized protein
STRINGscaffold_802976.16e-99(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63742746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.14e-81Dof family protein
Publications ? help Back to Top
  1. Miyashima S, et al.
    Mobile PEAR transcription factors integrate positional cues to prime cambial growth.
    Nature, 2019. 565(7740): p. 490-494
    [PMID:30626969]