PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g068440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 1454aa    MW: 163885 Da    PI: 6.5525
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g068440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY44.43.3e-14133413722259
                      EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59  
                      rsYY+C+s  gC+++k+ver+++dp++++itY+ eHnh+
  Csa11g068440.1 1334 RSYYKCSSLrGCSARKEVERCQTDPNMLVITYTFEHNHS 1372
                      9******998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002550.003835166IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522002.88E-738125IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525401.14E-38157399IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.4E-9187278IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3002.7E-8193284IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.2E-23195210No hitNo description
PRINTSPR003641.2E-23264278No hitNo description
PfamPF009311.9E-8298408IPR002182NB-ARC
PRINTSPR003641.2E-23339353No hitNo description
SuperFamilySSF467852.01E-10380474IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520586.38E-32511836IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.5E-25517826IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077252.7E-7580599IPR011713Leucine-rich repeat 3
PRINTSPR003641.2E-23754770No hitNo description
PfamPF139662.1E-611911254IPR026960Reverse transcriptase zinc-binding domain
SMARTSM007742.1E-813301373IPR003657WRKY domain
SuperFamilySSF1182901.16E-1113331374IPR003657WRKY domain
PfamPF031062.8E-1213331371IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-1513331374IPR003657WRKY domain
PROSITE profilePS5081117.5813341374IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1454 aa     Download sequence    Send to blast
MECSANTIVL KSLFSFRCDP DSLTSTISKI MAESEQIVYI SCVEEVRYSF VSHLSAALRR  60
KGIHDLFIDS DDLLSDESKS KIERAKVSVM ILPSNRTVCL DKFVKVLECR TNKDQAVVPV  120
LYGVRSIENL WVSALDSKGF SLVHQTRKEC SDSQLVKEIV RDVYEKLFSM ERIGIYPKLL  180
EIENMVSKQP FGIRCVGIWG MPGIGKTTLA KAVFDQMSGG FDASCFIQDY TKAIQEKGIY  240
RLLEEQFLKD KPGNIPKLSL LRDKLNNKRV LVVLDDVRNP LVVESFLRGC FAFVESIKCY  300
EVQGLNEKEA LQLFSLCASI DNQAEQKLHE VSMKVIKYAN GHPLALNIYG SELKGKKIPP  360
EMETASLELK ERPPTKFVDA IMSCYDTLND SQKNIFLDIA CFFQGENVDY VMQLLESCGF  420
FPHVGIDVLV EKCLVAISEN RVRMHNLIQN AGRKIITIET GQTKRRSRLW EPWCIKALLE  480
NNNERKENGE RETTSKHALG TEEIEGMFLD TSNLCFDIEP AAFDNMLNLR LLKIYSSNPE  540
VHHVISVLEG SLYSLPNELR LLHWENYPLQ FLPQKFDPIH LVEINMPYSE LKNLWGGTKN  600
LEMLRTIRLC HSQQLVDIDD ILKAQNLEVI DLQGCTRLQS FPAVGHLLHL RVVNLSGCTE  660
IKSFPEIPPN IETLNLQGTG IIELPLSIVK PNYRELLNLL AEIPGLSGVS NLEQSDLKPL  720
ASLMKMSTSN QNLCKLIFLE LKDCSRLRSL PNMDNLELLK VLDLSGCSDL ETIQGFPRNL  780
KELYLAGTAV RQVPQLPQSI EFFNAHGCVS LKSICLNFEK LPVHYLFSNC FDLSPQVVND  840
FLVKALANAE HIPREGQQEP NKALAFSFCA PSHANQNSKL DLQLGSSVMT RLNPSWRNTL  900
VGFAMLVEVA FSEVYCDPTG FGISYVCKWK NKQGQSHRIQ KNLHCWALGK TVPKVQKDHM  960
FVFCDVNMLP STDEENDPDI WADLVVFEFF PVNKQTKPLD VSFTVTRCGV RVITAASCNT  1020
SLENISPVLS LDAMEVSGNE GEEVSRVSYD GLQEIDKALF LAGQVSRVSY NGLQEIDKAL  1080
FLCIAGLFND EGVGLVAPLI DKIIDMDVSY GLKVLADRLM DVFGDRGVID LGISKQLSLA  1140
EVWVSRRHRR RHRGDQLNAV EQALGSRRDL RRESDDQVLW QGRNDVFKTT FSTKDTWNHI  1200
RTMANTVSWH KGVWFTHGTL KFSFCVWLAV QDRLPTGDRM VMWNGTAAGN CGLFKAHFST  1260
DWSAVMAHLS LSTLPRVEGF LLRYVFQMVV YTIWRERNGR RHGDLPHSAT YLVGWIDRQV  1320
RDQLLAIGRL GDRRSYYKCS SLRGCSARKE VERCQTDPNM LVITYTFEHN HSCPMNARLS  1380
AAPLVPLPPP NAQLCSSSSK CSVGTTSASS RVSRNEDEAN KYHFPSSPTP LNAAEGVKEE  1440
DAEEPFDNMD FAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c6t_A2e-43321743151PROBABLE WRKY TRANSCRIPTION FACTOR 52
4c6t_C2e-43321743151PROBABLE WRKY TRANSCRIPTION FACTOR 52
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441797.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 16
SwissprotQ9FL920.0WRK16_ARATH; Probable WRKY transcription factor 16
TrEMBLR0G8C30.0R0G8C3_9BRAS; Uncharacterized protein
STRINGAT5G45050.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.10.0Disease resistance protein (TIR-NBS-LRR class)