PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g041480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 324aa    MW: 35400.8 Da    PI: 5.4564
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g041480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.14.3e-36133223298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      fqrlwse+De +lLqG+idfka++g+sp+dd+++f++++k++isf+vsk q+ +Kir+LKkK+   +kk        ++++hd+k+++l+k iW
  Csa11g041480.1 133 PFQRLWSEDDETSLLQGMIDFKAEKGTSPYDDMNGFFDMAKNNISFDVSKIQFGDKIRSLKKKYFAIQKK------GGLESSHDKKCLGLAKYIW 221
                     69********************************************************************......67889************** PP

          DUF573  97 gs 98 
                     gs
  Csa11g041480.1 222 GS 223
                     95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.5E-27134222IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAKKVLNPLE DPPTASSSGE EEVETSSGEE DVEQISNSSS SEENDPKDLA TSKTLKTPPD  60
TASSTESEGS ESESEPSPEK TVAVVTSKPK KKEGNESTAA KPGKKRGSEA ETTSKDMHVK  120
KAKKVSGDDE KKPFQRLWSE DDETSLLQGM IDFKAEKGTS PYDDMNGFFD MAKNNISFDV  180
SKIQFGDKIR SLKKKYFAIQ KKGGLESSHD KKCLGLAKYI WGSDGMALES AVKLANGKLK  240
SGGDNVGEDK EVVSLFEKSF LVRTIAGLGV DAFSVKEKWS KVSVETKKRI EEKLKLVEAK  300
EYELLRLKSD TLKEVAYVMT RGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440563.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLR0G5T31e-110R0G5T3_9BRAS; Uncharacterized protein
STRINGAT1G44810.11e-102(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44810.11e-93DNA-binding storekeeper protein-related transcriptional regulator