PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g041370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 325aa    MW: 37244.7 Da    PI: 7.4989
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g041370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.9e-15949343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    +en+  r + + +R++g+lKK +ELS+LCd+ v++iif ++
  Csa11g041370.1  9 VENDKARAIILKRRKEGLLKKVKELSILCDIWVCLIIFCPN 49
                    69999*********************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-15158IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-6121IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.334146IPR002100Transcription factor, MADS-box
CDDcd002664.34E-24383No hitNo description
SuperFamilySSF554551.31E-17391IPR002100Transcription factor, MADS-box
PfamPF003191.4E-13949IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-62136IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-63657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAKLKLAWVE NDKARAIILK RRKEGLLKKV KELSILCDIW VCLIIFCPNE AEPVVWPSAE  60
RARGLVNDFF ALPKFVQKKK ETDVESFLKE KTNAVRKQLM KSSKKTKEYV TDELMLRLQH  120
GRGIEDLNLS EIYALLSYSK EKIILCRKNS DFMQFSPLRD PPVLPFEVQA KQLTITTNDF  180
FVGGGQDDDK AEFDPQPLEH VSYCPYQGSS SNGNASLEME PIYPSVMRFH GLVGSASQQL  240
QHLNINNNPI MAMNQPKQYL FDFMSHKQEI EEGKNNINTH IYRANNTKTT KNDVRQEPPP  300
SETTGREDNV NMMSLDIDRD WLSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g041370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445462.10.0PREDICTED: agamous-like MADS-box protein AGL92
TrEMBLR0HWZ51e-131R0HWZ5_9BRAS; Uncharacterized protein
STRINGXP_010445462.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-111AGAMOUS-like 48