PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g033160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 209aa    MW: 23150.4 Da    PI: 9.848
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g033160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013527123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C+ksF +   L  H+++H
  Csa11g033160.1  5 HKCKLCSKSFCNGRALGGHMKSH 27
                    79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.42E-5328No hitNo description
PfamPF139126.5E-6527IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQPSTRKKLA DSVHSSSCSS SDGKSLVYGL  60
RENPRKSFRV FNPDPESSTV YNSETETEPE SGSPVKKRVR AEVSKKKKKK KKSSKRVCEN  120
SKKQKTSHES PEPASSVSDG SPEQDLAMCL MMLSRDSREL EIKPVFASEV VEETKPEKIH  180
FPELRRCMID LNLPPPQETE AVTVVSAI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195111KKRVRAEVSKKKKKKKK
2105111KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankBT0053920.0BT005392.1 Arabidopsis thaliana clone U50122 unknown protein (At4g16610) mRNA, complete cds.
GenBankBT0041860.0BT004186.1 Arabidopsis thaliana clone RAFL15-32-J24 (R50122) unknown protein (At4g16610) mRNA, complete cds.
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449743.11e-149PREDICTED: zinc finger protein ZAT9-like
RefseqXP_010440125.11e-149PREDICTED: zinc finger protein ZAT9-like
TrEMBLO235041e-113O23504_ARATH; C2H2-like zinc finger protein
STRINGAT4G16610.11e-112(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.12e-90C2H2-like zinc finger protein