PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g030060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 406aa    MW: 44536 Da    PI: 8.3758
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g030060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.35.7e-38531932135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......k 89 
                      g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++ + ++++++++++n + +       +
  Csa11g030060.1  53 SGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL-NNTN-FPTDDDENQNHQNRTLTttttaaaN 145
                     689*************************************************************.3333.2223333333332222255666665 PP

             TCP  90 aaksaa.kskksqksaasalnlak.esrakarararertrekmriknk 135
                     + +++a +s++++++++s l+l + e r kar+rarert+++ + +++
  Csa11g030060.1 146 SLSKSAcSSNSDTSKNSSGLSLLRsELRDKARERARERTAKETKERSS 193
                     5566665666777777777877777999************99988866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-3854190IPR005333Transcription factor, TCP
PROSITE profilePS5136931.22155113IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.205170191IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MFRKLGDDDG MIGDLMKSNN NNNGDVVDNN NGNNRLSRWH HNSSRIIRVS RASGGKDRHS  60
KVLTSKGPRD RRVRLSVSTA LQFYDLQDRL GYDQPSKAVE WLIKAAEDSI SELPSLNNTN  120
FPTDDDENQN HQNRTLTTTT TAAANSLSKS ACSSNSDTSK NSSGLSLLRS ELRDKARERA  180
RERTAKETKE RSSDHHHHQS HTTTFTDLLN SSSDPVNSNR QWMAQAPSAS SPMEYFTSGL  240
ILGSGQQTHF PISTNSHPFS SISDHHHHHQ HHHPHQEFSF VPDHLISPAG SNGGAFNLDF  300
NMSTPSGAGA AVSASSGGGF SGFNRGTLQS NSTTSNQHQS FLANLQRFPT SSEGGGGGPQ  360
FLFGALPAEN HHHNHNHNQN NNHQFQLYYE NGCRNSSDHK GKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2360114155Putative transcription factor PCF6
5zkt_B3e-2360114155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g030060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439860.10.0PREDICTED: transcription factor TCP2
RefseqXP_010439862.10.0PREDICTED: transcription factor TCP2
SwissprotQ93V430.0TCP2_ARATH; Transcription factor TCP2
TrEMBLD7MCT10.0D7MCT1_ARALL; Uncharacterized protein
STRINGXP_010439860.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.27e-74TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]