PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g033280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 324aa    MW: 35682 Da    PI: 5.0843
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g033280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573119.22.3e-37136228198
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                     klfqrlwse+De +lLqG+idfka++g+sp+dd+++f++++k++isf+vsk q+ +Kir+LKkK+  k+kk     +  ++++hd+k++el+k i
  Csa10g033280.1 136 KLFQRLWSEDDETSLLQGMIDFKAEKGTSPYDDMNGFFDMAKNNISFDVSKIQFGDKIRSLKKKYFAKQKK-----KSGLESSHDKKCLELAKYI 225
                     579*******************************************************************9.....667889************* PP

          DUF573  96 Wgs 98 
                     Wgs
  Csa10g033280.1 226 WGS 228
                     *95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.3E-28138227IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAKKVLNPLE DPPTASSSSG DEEVETLSGE EDVEQTSNSS SSSSSSEEED DPKDLATPKT  60
LKTPPANASS TESEDSESES EPSPEKTIAV VVTTKPKKNE STAAKPGKKR GSEAETTSKD  120
MHVKKAKKVS GDDEKKLFQR LWSEDDETSL LQGMIDFKAE KGTSPYDDMN GFFDMAKNNI  180
SFDVSKIQFG DKIRSLKKKY FAKQKKKSGL ESSHDKKCLE LAKYIWGSDG KLKKFGGDNV  240
GEEVILGGDS ESLSLFEKSF LVRTIAGLGV DEFSVKEKWS KVSLETKKRI EEKLKLVEAK  300
EYELLRLKSD TLKEVAYVMT RGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435246.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLQ9LPF01e-102Q9LPF0_ARATH; DNA-binding storekeeper protein-related transcriptional regulator
STRINGAT1G44810.11e-101(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44810.11e-84DNA-binding storekeeper protein-related transcriptional regulator