PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g028680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 208aa    MW: 23859.6 Da    PI: 10.016
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g028680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.27.2e-142603798
                    EEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 37 tledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    +++ ++g sWev +  +k+++ yv++ +GW++Fv++n L   +f++F+++g++ f  +v +f+
  Csa10g028680.1  2 KIRAQWGSSWEVGV--SKNPRFYVMEkSGWEKFVSDNALGHSEFITFTHKGKMWF--TVNIFK 60
                    67889*********..******777659*********************999999..888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.51E-7160No hitNo description
PROSITE profilePS5086311.843162IPR003340B3 DNA binding domain
SMARTSM010190.85162IPR003340B3 DNA binding domain
PfamPF023622.8E-11161IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-12263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-11368IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-9113204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-11113204IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.741117207IPR003340B3 DNA binding domain
SMARTSM010190.0011120207IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKIRAQWGSS WEVGVSKNPR FYVMEKSGWE KFVSDNALGH SEFITFTHKG KMWFTVNIFK  60
QDGKEMMQPP SLIKTDHVED DKKEEVVKKA EESKNFTRTE KVVRVRRDSG GASSSSVAEF  120
TVIIRKTYLK WLKIPKDHRQ KAKKAIFMIH HSNGKKTWDV VVCLAEGYAF FSGGWAYVVK  180
EYPIAVDDIC TFTFIKPDEL ILVVSKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886210.15e-92transcriptional factor B3 family protein
SwissprotQ5BPT79e-83Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7L1435e-92D7L143_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.3__3493__AT2G16210.12e-91(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.12e-74B3 family protein