PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g075370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 384aa    MW: 40221.5 Da    PI: 8.9859
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g075370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.82.2e-3958167289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 
                     +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  +s    +   +   
  Csa09g075370.1  58 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 149
                     5789************************************************************999998874333333333322221...0212 PP

             TCP  89 .................k 89 
                                      +
  Csa09g075370.1 150 assplssfhttgmslyeD 167
                     334444433333444331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3564184IPR005333Transcription factor, TCP
PROSITE profilePS5136928.03164118IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MELHTNQNSG VSDSTLQLNS GDKQHSIPFV GAMSTTTSSS TSNSTSTSSG TALAVVKPAA  60
KKPSKDRHTK VDGRGRRIRM PAMCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIASTG  120
TGTIPANFST LNASLRGGGS TLFAQPSKSA SSPLSSFHTT GMSLYEDTSN GTNGSSSSVD  180
PSRKLLNSAA AAQNAAAVFG FHHQMYPPIM STERAPSNLV KSYREDYFKE PGAEPSGSSQ  240
KQGQFQDQEL GQGGRTAATA NVVPQPMWAV APGTTNGGSA FWMLPMSGSG GREQMQQQQG  300
HQMWAFNPGN YPVGSGRVVT APMGSMMLGG QQLGLGVAES NMAAAMRGGS RGDGLAMTLD  360
QHQHQHQEPN QSQASENGGD DKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g075370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428054.10.0PREDICTED: transcription factor TCP22-like
SwissprotQ9C7G40.0TCP22_ARATH; Transcription factor TCP22
TrEMBLR0I9T30.0R0I9T3_9BRAS; Uncharacterized protein
STRINGXP_010428054.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-146TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]