PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g052710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 222aa    MW: 23825 Da    PI: 7.342
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g052710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-0596118123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ CgksF++   L  H  +H
  Csa09g052710.1  96 YKCSVCGKSFPSYQALGGHKTSH 118
                     9***********99998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-994118No hitNo description
Gene3DG3DSA:3.30.160.602.1E-494118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-1496120IPR007087Zinc finger, C2H2
SMARTSM003550.002296118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78396123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SuperFamilySSF576671.68E-9152179No hitNo description
PfamPF139122.9E-12156181IPR007087Zinc finger, C2H2
SMARTSM003551.2157179IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871157179IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MALDTLNSPT STTTTNAPPP PPFLRCLDQT EPENLESWTK RKRTKRHRTD QSNPPSEEEY  60
LALCLLMLAR GSSDHHSLPS DHHSPSSPPS DHQKDYKCSV CGKSFPSYQA LGGHKTSHRK  120
PVSNNNNDDG NNNTNGSVTN NANITSNGLV GQSGKTHNCS ICFKSFPSGQ ALGGHKRCHY  180
DGGGGSNSNM PSHGFDLNLP ADQVSDGKSQ LSDDEVTKSV L*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g052710.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329781e-120AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0293771e-120BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds.
GenBankCP0026861e-120CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426524.11e-162PREDICTED: zinc finger protein AZF1-like
SwissprotQ9SSW11e-68AZF1_ARATH; Zinc finger protein AZF1
TrEMBLR0HHN91e-106R0HHN9_9BRAS; Uncharacterized protein
STRINGXP_010426524.11e-162(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-73C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]