PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g039380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 196aa    MW: 21923.4 Da    PI: 5.5088
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g039380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.34.8e-29141675115
             TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssaseceaessss 80 
                     +++ +++h kvggRdRR+Rl+ ++a ++F L+deLGf +d++t++WLl++a+pai ++tg                                   
  Csa09g039380.1  14 TKTPKDRHLKVGGRDRRIRLPPSVAPQLFNLTDELGFQTDGQTVDWLLRNAEPAIFAATGHgisttpndvihssynnfhnY-------------- 94 
                     56789********************************************************66333333322222222220.............. PP

             TCP  81 sasnsssg.............................................kaaksaakskksqksaasalnlakesr 115
                            +                                             +++++  k k++ ++ +    l+++++
  Csa09g039380.1  95 -------DfncgnnctingnntingtidgdkltgvntvhhemvfpvgtmkehaASSTFPVKDKEDVSDMSMLPPLMHHQQ 167
                     .......1223333444444445566666667777777777777777777433223333333333333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2417123IPR005333Transcription factor, TCP
PROSITE profilePS5136924.9651771IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDSRKEMNNM EKATKTPKDR HLKVGGRDRR IRLPPSVAPQ LFNLTDELGF QTDGQTVDWL  60
LRNAEPAIFA ATGHGISTTP NDVIHSSYNN FHNYDFNCGN NCTINGNNTI NGTIDGDKLT  120
GVNTVHHEMV FPVGTMKEHA ASSTFPVKDK EDVSDMSMLP PLMHHQQQQE QEPQPQFELG  180
KVEMAADEKI YVWSE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00390DAPTransfer from AT3G45150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431004.11e-148PREDICTED: transcription factor TCP16-like
SwissprotQ9M1U43e-53TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL89e-68D7LNL8_ARALL; Putative uncharacterized protein
STRINGscaffold_501366.13e-67(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.11e-52TCP domain protein 16