PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g008780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 349aa    MW: 38918.9 Da    PI: 10.0666
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g008780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.51.6e-1362110155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+ +++g
  Csa09g008780.1  62 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAAHRFRG 110
                     689***9788.8*********3.....5************************998 PP

2B399.91.5e-31193298198
                     EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f+k+ tpsdv+k++rlv+pk+ ae+h          g  + +++ l++ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + F+++
  Csa09g008780.1 193 FEKTVTPSDVGKLNRLVIPKHQAEKHfplpldggnnG--SVKGMLLSFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLICFRRS 285
                     99******************************88533..35899*************************************************98 PP

                     SSSEE..EEEEE- CS
              B3  86 grsefelvvkvfr 98 
                     + ++ +l++++ +
  Csa09g008780.1 286 NGQDDKLFIGWKS 298
                     7788889999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-962110IPR001471AP2/ERF domain
CDDcd000181.49E-2662120No hitNo description
SuperFamilySSF541711.5E-1762118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-2163119IPR001471AP2/ERF domain
SMARTSM003802.0E-2963124IPR001471AP2/ERF domain
PROSITE profilePS5103220.38963118IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-38186303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-31189297IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-26192287No hitNo description
PROSITE profilePS5086313.69193300IPR003340B3 DNA binding domain
PfamPF023629.0E-28193299IPR003340B3 DNA binding domain
SMARTSM010196.1E-25193300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDTMSSVDES STTTDSIHTP VKIPARKSPS PAGLLYRMGS GTSVVLDSDN GLEAESRKLP  60
SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAARA YDVAAHRFRG RDAVTNFKET  120
TLVNGNDGGD EDEVDFLNAH SKSEIVDMLR KHTYKEELEQ RKRKRNGNGN KTMGFGSVTA  180
AVMTGFKTSK LLFEKTVTPS DVGKLNRLVI PKHQAEKHFP LPLDGGNNGS VKGMLLSFED  240
VNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKRLCAGDLI CFRRSNGQDD KLFIGWKSNS  300
GSGSRSGSDR VVRLFGVDIC FNDAAVVAKK EEKDMLVSLR CNKKQRAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5918930210120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g008780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0286071e-145AB028607.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K13N2.
GenBankAJ4410731e-145AJ441073.1 Arabidopsis thaliana mRNA for putative auxin response factor 14 (arf14 gene).
GenBankAK2294151e-145AK229415.1 Arabidopsis thaliana mRNA for AP2 domain transcription factor, complete cds, clone: RAFL16-68-B16.
GenBankAY0879511e-145AY087951.1 Arabidopsis thaliana clone 39877 mRNA, complete sequence.
GenBankCP0026861e-145CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425223.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor ARF14
SwissprotQ9LS060.0RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLD7LQT80.0D7LQT8_ARALL; Uncharacterized protein
STRINGXP_010425223.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-178ethylene response DNA binding factor 3