PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09935s010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 128aa    MW: 13131.8 Da    PI: 7.5536
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09935s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP324.1e-101304777
             TCP 47 tieWLlqqakpaikeltgtssssaseceaes 77
                    tieWLl+qa+p+i+++tgt++++as+++ +s
  Csa09935s010.1  1 TIEWLLRQAEPSIIAATGTGTTPASFST-AS 30
                    9******************999997772.22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-6135IPR005333Transcription factor, TCP
PROSITE profilePS5136911.361116IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
TIEWLLRQAE PSIIAATGTG TTPASFSTAS LATSSPFTLG KRVVRAEEGE SNGGGGGGVG  60
GLTVGHTMGT SLMSGGGSAG FWAVPARPDF GQVWSFAAGA PPEMVFAQQQ QPATLFVIKL  120
PRPQQLQW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09935s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288561.16e-65transcription factor TCP21
SwissprotQ9FTA22e-50TCP21_ARATH; Transcription factor TCP21
TrEMBLR0GX401e-63R0GX40_9BRAS; Uncharacterized protein
STRINGCagra.1365s0040.1.p2e-64(Capsella grandiflora)
STRINGXP_006288561.12e-64(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.12e-22TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  3. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]