PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g063550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 273aa    MW: 31298.1 Da    PI: 6.5428
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g063550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.74.7e-23112172259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg+ WrKYGqK++k+s++ rsYY+C+++   +C++kk+v++ +++p +  +tY g+H+++
  Csa08g063550.1 112 HDGFLWRKYGQKQIKESDHQRSYYKCAYTkdqNCEAKKQVQKIQHNPPLYSTTYFGHHTCQ 172
                     6**************************988899**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-23103172IPR003657WRKY domain
PROSITE profilePS5081120.105106174IPR003657WRKY domain
SuperFamilySSF1182901.7E-22107173IPR003657WRKY domain
SMARTSM007741.4E-33111173IPR003657WRKY domain
PfamPF031069.9E-23113172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MNSCQQKAME KLLHGRGCAN QLLVMDHTES DSSMEREDLA KSVLHCFSDA LSMLIDTNNH  60
EHQDDQSNNS SPQDSSPVLE SARKPLHKRG RKTSMAESSD YHRHESSTPI YHDGFLWRKY  120
GQKQIKESDH QRSYYKCAYT KDQNCEAKKQ VQKIQHNPPL YSTTYFGHHT CQLHQAYATF  180
PTDTSDPEDH EGSHMIRFGH PNTSFSSSSS TNSLCQHQSQ NQNQNQNHIK DEYMTPDKAE  240
EWSPSKWMSS EVAHAVEAFE FNPFWTSHDL SS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937300.0AB493730.1 Arabidopsis thaliana At5g01900 mRNA for hypothetical protein, partial cds, clone: RAAt5g01900.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424008.10.0PREDICTED: probable WRKY transcription factor 62
SwissprotQ9LZV61e-174WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLR0ET481e-177R0ET48_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0006_131e-173(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-152WRKY DNA-binding protein 62