PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g054880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 301aa    MW: 34366.4 Da    PI: 10.1166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g054880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-1819110196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkvl + d +++++  +p +fa+ +  ++    t++++ ++g +Wev++  +k+++  ++ ++GW++Fv++n L  ++f+ F+++++++f+  v
  Csa08g054880.1  19 FFKVLNSLDISSENMRAIPHDFARCFPDDE-LLGTMKITVPWGSTWEVRV--SKNPRFyFMEKSGWEKFVRDNALGRNEFLCFTHKEEMDFS--V 108
                     99*********************7776665.555****************..******555569********************99989994..4 PP

                     EE CS
              B3  95 kv 96 
                      +
  Csa08g054880.1 109 NI 110
                     44 PP

2B337.93.1e-122222941693
                     EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3  16 lvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     l lp+  a+++      +s ++++ +++g +sW+v +    +++++++++GW++ +k+  +  gD++ F+l++   fel+
  Csa08g054880.1 222 LGLPRYAANDYlP--RVKS-MVKIHHPDGeKSWSVVY--LVTRRGHLFSGGWRRLCKEYPIAFGDTCKFTLIK--PFELL 294
                     6789888888843..3344.8*****9999*******..999999*************************986..55554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.5E-2014114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-1915119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-1817110No hitNo description
PfamPF023629.8E-1719110IPR003340B3 DNA binding domain
PROSITE profilePS5086312.68919114IPR003340B3 DNA binding domain
SMARTSM010196.0E-1919109IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-16206297IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.77207300IPR003340B3 DNA binding domain
CDDcd100175.45E-8210296No hitNo description
SMARTSM010198.9E-14210300IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-12220295IPR015300DNA-binding pseudobarrel domain
PfamPF023624.6E-10221293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGSNPEFVRF YGERTQPSFF KVLNSLDISS ENMRAIPHDF ARCFPDDELL GTMKITVPWG  60
STWEVRVSKN PRFYFMEKSG WEKFVRDNAL GRNEFLCFTH KEEMDFSVNI MTQTGKEMVQ  120
PPKTRDFLAS SSRVKTEQEG VKTEEVVVSS ELSSRVPRTA AGTSRGGMYK RNLNFGKKKA  180
EESHNTKRTE RVFSIRRDHA GASSFSVAGF EIVISKTYLI SLGLPRYAAN DYLPRVKSMV  240
KIHHPDGEKS WSVVYLVTRR GHLFSGGWRR LCKEYPIAFG DTCKFTLIKP FELLLVVTKP  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545972e-87AC254597.1 Capsella rubella clone CAP08-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010422943.10.0PREDICTED: B3 domain-containing protein REM23-like
SwissprotQ9LXE11e-131REM23_ARATH; B3 domain-containing protein REM23
TrEMBLR0FG331e-156R0FG33_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0006_8791e-141(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09780.11e-126B3 family protein