PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g027460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25752.7 Da    PI: 9.769
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g027460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.12.7e-19342241
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    +ien++ r+ tf kR+ gilKKA+EL +LCd+ ++vi+ s
  Csa08g027460.1  3 FIENETARKSTFKKRKRGILKKAHELATLCDVPICVIVNS 42
                    8************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.876142IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-17153IPR002100Transcription factor, MADS-box
CDDcd002666.73E-23178No hitNo description
SuperFamilySSF554554.06E-22288IPR002100Transcription factor, MADS-box
PfamPF003196.2E-18342IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-51631IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-53152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAFIENETAR KSTFKKRKRG ILKKAHELAT LCDVPICVIV NSAYESNPEV WPSREAADKV  60
VSQWRMMSVM DQTKKMVNQE SFLQQRITKA TESWRKARRE NKELEMKNIM FDCLSGKTLV  120
SRLPKSDLRD FGSVIEQHLK DVNRRMEILK RNDDESSSSL VPIDAATTSS AMPMIEMGSS  180
SSSVMPMIEM GSSSVGFHEK ILDQIQNTLN MKNTNKDLDL NKKQW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g027460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8306901e-179AB830690.1 Turritis glabra AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e058.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421527.11e-167PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLS6B3Z01e-120S6B3Z0_TURGL; Agamous-like MADS-box protein AGL35
STRINGXP_010421527.11e-166(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-100M-type_MADS family protein