PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g017630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 265aa    MW: 28322.3 Da    PI: 10.3911
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g017630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.91.8e-38361593133
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                     +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s  +sn+s +         
  Csa08g017630.1  36 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSIRGSNNSTPlssslldhk 129
                     79**************************************************************9999777.33333344433333444444444 PP

             TCP  89 ......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                           +                     +      +r ra e +++ ++++
  Csa08g017630.1 130 pttllgS---------------------SSPFILGKRVRADEDSHNHNNNN 159
                     4445442.....................32222333333333222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.4E-3441162IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8924195IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSINNNNNNN GVMISSSSNG SASLIEQQQQ SSSVVVKKPP AKDRHSKVDG RGRRIRMPII  60
CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASV SIRGSNNSTP  120
LSSSLLDHKP TTLLGSSSPF ILGKRVRADE DSHNHNNNNN SSGGKDESFT TTTPAGFWAV  180
PARPDFGQVW SFTGGGAPVQ EMFLQQQHHQ QPLFVHHHQQ QQQQAAMGEA SAARVGNYLP  240
GHLNLLASLS GGSPGSGRRD EDPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g017630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421128.10.0PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX21e-129TCP7_ARATH; Transcription factor TCP7
TrEMBLD7M1Q21e-125D7M1Q2_ARALL; Uncharacterized protein
STRINGXP_010421128.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-84TCP family protein