PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g006150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 269aa    MW: 30350.4 Da    PI: 8.6805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g006150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-05101123223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  Hi+  H
  Csa08g006150.1 101 SCSVCSRVYPTSRLLSIHISEaH 123
                     6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.227398IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807598IPR007087Zinc finger, C2H2
SMARTSM003555100123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102123IPR007087Zinc finger, C2H2
SMARTSM003550.095138163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140163IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
CGEAMAMGMT VDTVGELAFP VWNPIRRRFP PDSPFFASGN VERELLAKQV ALDLTEDEIN  60
HLQIIVETES RRISCPIAGC PERLKSLDHF EDHYNARHTA SCSVCSRVYP TSRLLSIHIS  120
EAHDSFFQAK VARGYDMYEC LVEGCGLKFK TYKARHRHLV DKHKFPTTFE FFKRTQLSKK  180
RREKLQRQHV SKLKHKEDKE EASSDAMEVE DKASVDGLVS ALSTLTTADT TPSNVSFGRR  240
HGRGLTFVPR SVHREKRTES SSAPGPTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g006150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937480.0AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.
GenBankAK2283560.0AK228356.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-77-M10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420037.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A178UDE40.0A0A178UDE4_ARATH; Uncharacterized protein
TrEMBLQ0WRF40.0Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein
STRINGXP_010420037.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-179zinc ion binding;nucleic acid binding;zinc ion binding