PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g016940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 282aa    MW: 32196.4 Da    PI: 6.5159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g016940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.3e-171459247
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     ien+s r+ tf kR++g  KK +ELSvLC++e++ +i+s+ + + 
  Csa07g016940.1 14 YIENDSMRKATFNKRKKGFEKKIHELSVLCGIEACAVIYSPFNSVP 59
                    59**************************************988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.128565IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-22564IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-23687IPR002100Transcription factor, MADS-box
CDDcd002667.35E-33687No hitNo description
PRINTSPR004041.9E-10727IPR002100Transcription factor, MADS-box
PfamPF003192.7E-161556IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-102742IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-104263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVNTKTRKKL NLSYIENDSM RKATFNKRKK GFEKKIHELS VLCGIEACAV IYSPFNSVPE  60
VWPSNLGVKN VVEKFEMLKD MEQEKKMRKM KDNAERMMKE AMFELLGGKA DRFKLTNIHR  120
EDLCKYIDQY LKELYHHKNK ILTQSHVEYG ESSEAATNVM APTSSLEVNS QFFPTLNVSN  180
SPQVTNDLWL LRPIISSSQI PEEVNTFPGN NLSAAAAQQD YYPVINPVGV YNHNANVNHL  240
GHNQYQQQDG YPTIVPQYGI DNLSQNQGQQ EEWLVSDDDL S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g016940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486064.11e-170PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLS6BIQ21e-116S6BIQ2_TURGL; Agamous-like MADS-box protein AGL45 (Fragment)
STRINGXP_010486064.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.13e-90M-type_MADS family protein