PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g015780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 157aa    MW: 16782.4 Da    PI: 10.4442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g015780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00133456123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F++   L  H  +H
  Csa07g015780.1 34 FACKTCNKEFPSFQALGGHRASH 56
                    78**********99999998887 PP

2zf-C2H212.20.0005478100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cg  F     L  H+r+H
  Csa07g015780.1  78 HECPICGAEFAVGQALGGHMRKH 100
                     79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.94E-832100No hitNo description
PfamPF139126.9E-133358IPR007087Zinc finger, C2H2
SMARTSM003550.233456IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3693461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
PROSITE profilePS501579.74378105IPR007087Zinc finger, C2H2
SMARTSM003550.06378100IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-1078102IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MERERSDMEM INKMASCLIL LSKNHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA  60
ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH RGGAGGGGGR SLAPATAPVT  120
MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRLIF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100109RGGAGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071840.0AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankBT0293300.0BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414490.11e-111PREDICTED: zinc finger protein ZAT12-like
SwissprotQ424101e-42ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLR0FYC61e-100R0FYC6_9BRAS; Uncharacterized protein (Fragment)
STRINGAT2G28710.13e-97(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-94C2H2 family protein