PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g007510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 142aa    MW: 16575.3 Da    PI: 5.6969
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g007510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.73e-4263139177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv++C++d+s+ak+yh+rhkvCe+h+kap v +sgl+qrfCqqCsrfhel efD++krsCrrrLa+hnerrrk++
  Csa07g007510.1  63 VCQVQSCTVDMSKAKQYHKRHKVCEFHAKAPIVRISGLHQRFCQQCSRFHELGEFDKAKRSCRRRLAGHNERRRKSA 139
                     6**************************************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375751.3E-561141IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.102.0E-3259125IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.74461138IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.65E-3863139IPR004333Transcription factor, SBP-box
PfamPF031101.6E-3264137IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MSMRRSKAEG KRSLRELSED EQEEEEEEEE EEEEETEDED TFEEEEEALE KKQKGKVAGS  60
SGVCQVQSCT VDMSKAKQYH KRHKVCEFHA KAPIVRISGL HQRFCQQCSR FHELGEFDKA  120
KRSCRRRLAG HNERRRKSAI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-3858137384squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0054431e-136BT005443.1 Arabidopsis thaliana clone U50647 putative squamosa-promoter binding protein (At2g33810) mRNA, complete cds.
GenBankAK1181791e-136AK118179.1 Arabidopsis thaliana At2g33810 mRNA for putative squamosa-promoter binding protein, complete cds, clone: RAFL19-50-A02.
GenBankY094271e-136Y09427.1 A.thaliana mRNA for squamosa-promoter binding protein like 3.
GenBankAJ2429591e-136AJ242959.1 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 3 (SPL3 gene).
GenBankAJ0116331e-136AJ011633.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413803.12e-95PREDICTED: squamosa promoter-binding-like protein 3
SwissprotP930153e-64SPL3_ARATH; Squamosa promoter-binding-like protein 3
TrEMBLR0HES91e-64R0HES9_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.4__1394__AT2G33810.13e-62(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.16e-63squamosa promoter binding protein-like 3