PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g007480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 1033aa    MW: 112845 Da    PI: 7.2864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g007480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-06101121526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     lC+ffa+ G+C  G +CkF H+
  Csa07g007480.1 101 LCKFFAK-GWCFNGVSCKFLHV 121
                     8******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-696120IPR000571Zinc finger, CCCH-type
SMARTSM003560.008196122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004101123IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MSDSDMDIDD DEVEQKVQVH TIGGESQLLH KPIQAPNPQN DVKRHSVTTP SNEQANIIKE  60
QAFAQDNGTL SRFPAPGITP NSFFPAAGEG NEPEQKRAAH LCKFFAKGWC FNGVSCKFLH  120
VKENSNCTSQ QQPENNMAGS SYIQSDVERR ISNSIRVSHL MENGVTPSHT REDLSFVNPP  180
GSQRVFSSMS FVNPPGSQRV FPFNNEMRFL PSSENIGRES LQQTCGAAFT DNRSLVINNS  240
NSFTLRSSFV HHEHRSPISS YLKPDIGSSG PAWTGSLSSS VASVPMNEGA STVANFKKED  300
NIYGSRSLPT LQESQAAVSS EKGAAGNTTS SRKKVSSDDW EPSEPFKASF TIPPYILPSS  360
DALYDPFTDI ENLGDRSRNA SLSSKGEQAR KNSRQQKDGD SGSGTQAREC KNDDKSSSCS  420
QNQHQESVAR RSLEPHGVVE GVATSVVDQN DTATPSKEIS SAAAAENRVV LKRSKPAGHD  480
AWHRSDGSSY KKTLKSDEID GEVRSDAEIK VMRQFRTAVV ETVKEMLKPL WREGRLTKDV  540
HNMIVKKAAE KVVSAAVQFH QVPTDTGSVD QYLGLSATKI VKLVEGNNIC GSRSLPTLQE  600
SQAAVSSEKG AACNTTSSKK KVSSDDWEPS EPFKASFTIP PYILPSSDAL YDPFTDIENL  660
GDRSLNASLS SKGEQARKNS RQQKDGDSGS GTQARECKND DKSSSCSQNQ HQESVARRSL  720
EAHGVVEGVA TSVVDQNDTT TPSKEISSVA AAENRVVLKR SKPAGHDAWH RSDGSSYKKT  780
LKSDEIDGEV RSDAEIKVMR QFRTAVVETV KEMLKPLWRE GRLTKDVHNM IVKKAAEKVV  840
SAAVQFHQVP TDTGSVDQYL GLSATKIVKL VEGYVEKYVE GVATSVVDQN DTATPSKEIS  900
SAAAAENRVV LKRSKPAGHD AWHRSDGSSY KKTLKSDEID GEVRSDAEIK VMRQFRTAVV  960
ETVKEMLKPL WREGRLTKDV HNMIVKKAAE KVVSAAVQFH QVPTDTGSVD QYLGLSATKI  1020
VKLVEVSFLD RN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g007480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288660.0AK228866.1 Arabidopsis thaliana mRNA for zinc finger (CCCH type) protein - like, clone: RAFL16-19-E15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082932.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLD7LGF20.0D7LGF2_ARALL; Frigida-essential 1
STRINGXP_010413800.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]