PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g052210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 360aa    MW: 38226.2 Da    PI: 10.3118
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g052210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.49.1e-3772158388
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                      k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++  +++ +  + ++  +
  Csa06g052210.1  72 LKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLKIPTTTNADS 158
                     6899***********************************************************888884442111111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3076156IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32777131IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MATYHQKQEE VGVKDQTLSR AVIINGVRNV ETSRPFQVNP TVSLEPKPEP VMQMQMQAPL  60
SLAPPSSTGL PLKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL  120
LENAEPAIIA ATGTGTVPAI AMSVNGTLKI PTTTNADSDL GDNPMKKKRK RPSNSEYIDI  180
NDAVSASSGL APITTTTMTT TMIQQRPAAP STTVAQQHMY PMWAIPSNAV IPTVGAFFLV  240
PQIAGPSNQP QLLAFPAAAA APPSSYVAAV QQASSLARPP PPSQQVYPGS GVSDVSGSNS  300
SRTTSAMAPS SSSRITTGGS SSAATTTTTH TLRDFSLEIY EKQELHQFMS TTTTRSSNN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00638PBMTransfer from Lj0g3v0004489Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g052210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0036801e-178AC003680.3 Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete sequence.
GenBankAF3706061e-178AF370606.1 Arabidopsis thaliana putative PCF2-like DNA binding protein (At2g45680; F17K2.21) mRNA, complete cds.
GenBankAK2215991e-178AK221599.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-89-L23.
GenBankAK2304511e-178AK230451.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-49-E05.
GenBankAY0562141e-178AY056214.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds.
GenBankAY1139811e-178AY113981.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds.
GenBankCP0026851e-178CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518212.10.0PREDICTED: transcription factor TCP9-like
SwissprotO646471e-173TCP9_ARATH; Transcription factor TCP9
TrEMBLR0HGG10.0R0HGG1_9BRAS; Uncharacterized protein
STRINGXP_010518212.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-149TCP family protein