PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g046490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 419aa    MW: 46054.5 Da    PI: 8.0692
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g046490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.46.1e-39551972135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++  ++a++ ++++++++++n++ +        
  Csa06g046490.1  55 SGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL--NNANFPTDDDENQNHQNQTLTtttvaagg 147
                     689*************************************************************..44444444555555554444467888899 PP

             TCP  89 .kaaksaa.kskksqksaasalnlak.esrakarararertrekmriknk 135
                      ++ +++a +s++++++++s l+l++ e r kar+rarert+++ + +++
  Csa06g046490.1 148 tNSLSKSAcSSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERSS 197
                     9666666668888888888899**999***************99988866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-3856194IPR005333Transcription factor, TCP
PROSITE profilePS5136931.22157115IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.205174195IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MLRKLRDDDE MIGDLMKSNN NNGDVVDNNN NNGNNNRLSR WHHNSSRIIR VSRASGGKDR  60
HSKVLTSKGP RDRRVRLSVS TALQFYDLQD RLGYDQPSKA VEWLIKAAED SISELPSLNN  120
ANFPTDDDEN QNHQNQTLTT TTVAAGGTNS LSKSACSSNS DTSKNSSGLS LSRSELRDKA  180
RERARERTAK ETKERSSDHH HHQSHTTTSF TDLLNSGSDP VNSNRQWMAQ APSASSPMEY  240
FTSGLILGSG QQTHFPISTN SHPFSSISDH HHHHQHHHPH QEFSFVPDHL ISPAGSNGGA  300
FNLDFNMSTP SGAGAAVSAS SGGGFSGFNR GTLQSNSTTS NHQHQHQHQQ QSFLANLQRF  360
PTSSEGGGGG PQFLFGALPA ENHHHNHNHN QNNNNHQFQL YYENGCRNSS DHKGKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2362116155Putative transcription factor PCF6
5zkt_B3e-2362116155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g046490.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3672701e-142AF367270.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds.
GenBankAF3672921e-142AF367292.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds.
GenBankAL0217101e-142AL021710.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project).
GenBankAL1615481e-142AL161548.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 48.
GenBankAY1021411e-142AY102141.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds.
GenBankCP0026871e-142CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517540.10.0PREDICTED: transcription factor TCP2-like
SwissprotQ93V430.0TCP2_ARATH; Transcription factor TCP2
TrEMBLD7MCT10.0D7MCT1_ARALL; Uncharacterized protein
STRINGXP_010517540.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-137TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]