PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g041320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 517aa    MW: 57202.8 Da    PI: 7.655
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g041320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.3e-33181238260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  +++++ei+Y+g+Hnh+k
  Csa06g041320.1 181 EDGYNWRKYGQKQVKGSENPRSYYKCTFQNCPTKKKVERSL-EGQITEIVYKGSHNHPK 238
                     7****************************************.***************85 PP

2WRKY105.72.4e-33359417159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d+++v++tYeg+Hnh+
  Csa06g041320.1 359 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDTRAVITTYEGKHNHD 417
                     59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-28169239IPR003657WRKY domain
SuperFamilySSF1182901.27E-24180239IPR003657WRKY domain
SMARTSM007741.9E-34180238IPR003657WRKY domain
PfamPF031063.5E-25181237IPR003657WRKY domain
PROSITE profilePS5081123.25181239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-37344419IPR003657WRKY domain
SuperFamilySSF1182902.09E-29351419IPR003657WRKY domain
PROSITE profilePS5081138.561354419IPR003657WRKY domain
SMARTSM007746.1E-39359418IPR003657WRKY domain
PfamPF031061.7E-25360417IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAASSLLTMD NSRTRQNMNG SASWSQQNGR TSLEDLEIPK FRSFAPSSIS ISPSLVSPST  60
CFSPSVFLDS PAFVSSSANV LASPTTGALI TNESNHIVIN EGDKKNNSSN SNNINFFDFS  120
FQTQSSGVTA PKTTTTTTTN SSIFQSQEQQ RKNQSDQWSQ TETRQNNQAV SYNGREQRKG  180
EDGYNWRKYG QKQVKGSENP RSYYKCTFQN CPTKKKVERS LEGQITEIVY KGSHNHPKPQ  240
STRRSSSSSS TFHSAVYNAS LDHHRQPSSD QPNSNNNSFH HSDSFPMQQE DNTTSDSVGD  300
DEFEQGSSIV SRDEEDCGSE PEAKRWKGEN EINGGNGGVS KTVREPRIVV QTTSDIDILD  360
DGYRWRKYGQ KVVKGNPNPR SYYKCTTVGC PVRKHVERAS HDTRAVITTY EGKHNHDVPA  420
ARGSGYATNR PSQDASSVPI RPAAIAGHSN YTTSQAPYTL QMLHNNNNNT NAGPFGYAMN  480
NNNNNNNLQQ NFVGDGFSRA KEEPNEESSF FDSFMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-38181420878Probable WRKY transcription factor 4
2lex_A7e-38181420878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0330300.0BT033030.1 Arabidopsis thaliana unknown protein (At2g38470) mRNA, complete cds.
GenBankAK2263010.0AK226301.1 Arabidopsis thaliana mRNA for putative WRKY-type DNA binding protein, complete cds, clone: RAFL05-11-J06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517143.10.0PREDICTED: probable WRKY transcription factor 33
SwissprotQ8S8P50.0WRK33_ARATH; Probable WRKY transcription factor 33
TrEMBLR0HAD40.0R0HAD4_9BRAS; Uncharacterized protein
STRINGAT2G38470.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45832755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.10.0WRKY DNA-binding protein 33