PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g024980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 290aa    MW: 31381.1 Da    PI: 8.0024
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g024980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.9e-20148182135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Csa06g024980.1 148 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 182
                     ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-19142194IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.929142178IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-13145183No hitNo description
Gene3DG3DSA:3.30.50.109.9E-17146182IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-12147179No hitNo description
PROSITE patternPS003440148173IPR000679Zinc finger, GATA-type
PfamPF003207.0E-18148182IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNSSNAGS YSMVFSMPNG GVFEQTGEDY  60
NHSSSAVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS NFWDLLHTKN NNSKTTPFSN  120
VLPFSSNKPT RGCSGGGGGG DSLLSRRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE  180
ERRTTAASGN IVVGAAPVQN EQYGHHNSGY NNYHAATSNN NNNGTPWAHH HSTQRVPCNY  240
PANEIRFMDD YNGGVGNNGE SDGAHGGVPF LSWRLNVADR ASLVHDFTR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (including its own promoter and GATA21 promoter), thus regulating the expression of genes mostly involved in hormone responses and floral organ specification (including genes regulating hormones responses) (PubMed:23335616, PubMed:26390296). Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:15367721, PubMed:23335616). Coregulates, with AGO10/PNH, the shoot apical meristem (SAM) organization. Regulates floral organ development via the promotion of JAG and NPR5/BOP2 expression. Modulates cytokinin homeostasis in organ boundaries by regulating CKX3 expression (PubMed:26390296). Involved in cell proliferation and differentiation (PubMed:15367721). Required to position the inductive proembryo boundary via the regulation of gene expression and for early embryonic development (PubMed:20643354). Together with GIF1/AN3, mediates cotyledon identity by preventing ectopic root formation through the repression of PLT1 expression (PubMed:22669825). {ECO:0000269|PubMed:15367721, ECO:0000269|PubMed:20643354, ECO:0000269|PubMed:22669825, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:26390296}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g024980.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed via a negative regulatory feedback loop. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936440.0AB493644.1 Arabidopsis thaliana At3g50870 mRNA for hypothetical protein, partial cds, clone: RAAt3g50870.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515465.10.0PREDICTED: GATA transcription factor 18-like
SwissprotQ8LC791e-179GAT18_ARATH; GATA transcription factor 18
TrEMBLD7LTK21e-178D7LTK2_ARALL; Predicted protein
STRINGXP_010515465.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-160GATA family protein
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]