PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g021260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 512aa    MW: 54633.2 Da    PI: 7.2247
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g021260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP135.83.7e-421152922134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                     + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ s +       
  Csa06g021260.1 115 PLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSLPshfrsaa 209
                     57999***********************************************************6666655554444444444222223334444 PP

             TCP  89 ...................................kaaksaa.kskksqksaasalnlakesrakararare.rtrekmrikn 134
                                                        +a +s+  ++ ++ ++++s+ln++++++++ ++++ e ++++k r+++
  Csa06g021260.1 210 stfspnnifspamlqqqqqqrgggggflhhphlqgRATTSSLfPGIDNFTPTTSFLNFHNQTKQEGDQDSDElSSEKKRRLQT 292
                     4455555555555555555566679999999**9988888889*****************************66666666654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.7E-41120297IPR005333Transcription factor, TCP
PROSITE profilePS5136927.505121175IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MQKPTSSILN VIMDGGDNVG GGGDDHHRHL HHHHRPTFPF QLLGKRDPDD NHQQQPSPSS  60
SSSLFSLHQH QQLSQSQPQP QLQQKPQSQT TTTQKELSQT QEDSTAVVSA AKKPPLKRAS  120
TKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP SVIAATGTGT  180
IPANFTSLNI SLRSSGSSMS LPSHFRSAAS TFSPNNIFSP AMLQQQQQQR GGGGGFLHHP  240
HLQGRATTSS LFPGIDNFTP TTSFLNFHNQ TKQEGDQDSD ELSSEKKRRL QTTSDLQLQQ  300
QHQHDQIGSY TLQSSNSGST ATAAAAAAQQ IPGNFWMVAA AAAAAGGGNN NQTGGLMTAS  360
IGGGGGNGGG EPVWTFPSIN TAAAALYRSG VSGVSGGAVS SGLHFMNFAA PMAFLTGQQQ  420
QQQQLATTSN HEINEDNNNN NNNNNEGGGR SDGGGGDHHS TQRHHHHHQQ QQQQHHHHNI  480
LSGLNQYGRQ VSGESQASGS LGGGDEEDSQ D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447455GGRSDGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g021260.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329550.0AL132955.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2.
GenBankAY0588740.0AY058874.1 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds.
GenBankAY1033040.0AY103304.1 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515068.10.0PREDICTED: transcription factor TCP14
SwissprotQ93Z000.0TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A1J3D5660.0A0A1J3D566_NOCCA; Transcription factor TCP14 (Fragment)
STRINGXP_010515068.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.11e-144TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]