PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g019820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 369aa    MW: 40273.2 Da    PI: 10.3328
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g019820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000437597123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++Cp+Cg  F+    L  H+r+H
  Csa06g019820.1 75 HPCPICGVNFPMGQALGGHMRRH 97
                    78********************9 PP

2zf-C2H211.90.00069281303123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + Cp+Cg  F+    L  H+r+H
  Csa06g019820.1 281 HICPICGLDFPMGQALGGHMRKH 303
                     68********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.62E-62497No hitNo description
PfamPF139123.9E-112550IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1412648IPR007087Zinc finger, C2H2
SMARTSM003550.632648IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.76275102IPR007087Zinc finger, C2H2
PfamPF139123.7E-107598IPR007087Zinc finger, C2H2
SMARTSM003550.257597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SuperFamilySSF576672.76E-7228303No hitNo description
PfamPF139124.5E-11229254IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432230257IPR007087Zinc finger, C2H2
SMARTSM003550.33230252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492281308IPR007087Zinc finger, C2H2
PfamPF139121.1E-9281304IPR007087Zinc finger, C2H2
SMARTSM003550.16281303IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280283303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNDTAARCLM LLPRVGEYGG GEKRVYRCKT CLKEFSTFQA LGGHRASHKK LINSEDPSLL  60
GSLSNKKTKA AMTSHPCPIC GVNFPMGQAL GGHMRRHRNE KASGTSLVTR SFLPEATTVT  120
TLKKCSSGKR VACLDLDLDS MDSLVNWKLE LETRTRHTNL TPTLERKQKT KENPRRASLN  180
SIQDFETMVA TRENLDPTMD KAAANCLMLL SRVGGGGGGE GTALKEKRVF RCKTCKREFS  240
SFQALGGHRA SHNKPTNNGD VTSIPGSPKK KTPTKTTTTI HICPICGLDF PMGQALGGHM  300
RKHRNEKEKA SNNELVTRSF LPENATLTTT TLKKSSSSGK RVACLDFADL AAVETLVNTN  360
LELGRTMY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514933.11e-107PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX852e-86ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLD7LMV21e-75D7LMV2_ARALL; Putative uncharacterized protein
STRINGAT3G46080.14e-84(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-80C2H2 family protein