PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g018900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 152aa    MW: 17100 Da    PI: 7.1437
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g018900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP84.82.2e-261484573
             TCP  5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssasec 73
                    +++ +++h kvggRdRR+Rl+ ++a ++F L+deLGf +d++t+ W l++a+pai ++tg   s++++ + 
  Csa06g018900.1 14 TRTPKDRHLKVGGRDRRIRLPPSVAPKLFSLTDELGFQSDGETVGWFLRNAEPAIFAATGHgvSTTPNDFI 84
                    56789********************************************************6644444222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-231789IPR005333Transcription factor, TCP
PROSITE profilePS5136923.371771IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDSRKEMNNM EKATRTPKDR HLKVGGRDRR IRLPPSVAPK LFSLTDELGF QSDGETVGWF  60
LRNAEPAIFA ATGHGVSTTP NDFIHSSDKN FHNYYFNCGN FSNTINGNCS YTINGNNTIN  120
GTIDGDNWTV HHEMVFPVVW SDELRFGLVR F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010412555.11e-100PREDICTED: transcription factor TCP16-like
RefseqXP_010514858.11e-100PREDICTED: transcription factor TCP16-like
SwissprotQ9M1U46e-48TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL85e-47D7LNL8_ARALL; Putative uncharacterized protein
STRINGscaffold_501366.11e-46(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.18e-49TCP domain protein 16