PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g017320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 243aa    MW: 26330.4 Da    PI: 5.493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g017320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016216238223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+k+F++   L++H +  H
  Csa06g017320.1 216 SCGSCKKTFNSGNALESHNKAkH 238
                     6*****************88766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.429215242IPR007087Zinc finger, C2H2
PROSITE patternPS000280217238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEFWGIEVKP GKPVKVTPEE DTLIHVSQVS LGECKNKKEE FVSVHVKVGN QKLVMGNLST  60
ENIPQLFCDL VFEKEFELSH NWGKGSLYFV GYTSPNIADN DGEDFSDSEE EEEELEEVPA  120
TITANGNAKP KAKPAQVTKN AKPADGMVVD ADEDSEEEEE TPTPKKPVSS KKRANEEAPK  180
TPVSSKKAKV AVTPQKTDEK KKGGKNQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA  240
AK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1955452e-86AF195545.1 Arabidopsis thaliana putative histone deacetylase (HD2A) mRNA, complete cds.
GenBankAY0967292e-86AY096729.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds.
GenBankAY0653962e-86AY065396.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514800.11e-175PREDICTED: histone deacetylase HDT1
SwissprotQ9FVE61e-105HDT1_ARATH; Histone deacetylase HDT1
TrEMBLR0FQZ91e-108R0FQZ9_9BRAS; Uncharacterized protein
STRINGAT3G44750.11e-103(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.15e-97histone deacetylase 3