PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g003110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24772.6 Da    PI: 9.8634
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g003110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.24.4e-181460248
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                     ien+s r+ tf kR++g  KK +ELSvLC++e++ +i+s ++ + e
  Csa06g003110.1 14 YIENDSMRKATFNKRKKGFVKKIHELSVLCGIEACAVIYSLSNSVSE 60
                    59**************************************9999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.35E-23589IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-24564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.502565IPR002100Transcription factor, MADS-box
CDDcd002663.78E-28689No hitNo description
PRINTSPR004046.6E-12727IPR002100Transcription factor, MADS-box
PfamPF003191.5E-161558IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-122742IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-124263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVNIMTRKKL NLSYIENDSM RKATFNKRKK GFVKKIHELS VLCGIEACAV IYSLSNSVSE  60
VWPSNLGVKN AVGKFEMLTD MEQEKKMVNH EGFLKQNISK AMGNNKRKMK NNAERMMKEA  120
MFELLGGKGD RFKLPNIHRE DLCKYIDQYL NELYHHKNKI LRQSHVEYGE SSEAATNVMA  180
PTSSVEVNFQ FFPTLNVSNS LYYYPVQIKS QFSY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g003110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518578.11e-159PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK38e-46AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLS6B4032e-96S6B403_ARAHA; Agamous-like MADS-box protein AGL45
STRINGXP_010518578.11e-159(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.29e-96M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]