PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g083210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 306aa    MW: 35370.2 Da    PI: 8.6364
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g083210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2331.5e-104086254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    +ykGV++   +g W ++I+       +kr++lg+f +a eAa a++ a  kl+
  Csa05g083210.1 40 KYKGVFQLQ-NGHWGVQIYTD-----QKRIWLGTFKSAVEAAMAYDSASIKLR 86
                    8****9888.8******8883.....5*********************99997 PP

2B382.24.8e-26134226183
                     EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+ltpsdv+k++rlv+pk++a ++          +g++ e+++++++d++ r+ +++++y+k+s+++v+t+GWk+Fv++++Lke+D++ F+
  Csa05g083210.1 134 FQKELTPSDVGKLNRLVIPKRYAVNYmpcisnkekeEGETVEGVEIVFYDRELRKRKFRYCYWKSSQSFVITSGWKSFVREKKLKEKDVISFY 226
                     99*********************999*****9888877777***************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-124097IPR016177DNA-binding domain
PfamPF008474.8E-64086IPR001471AP2/ERF domain
CDDcd000181.22E-174097No hitNo description
PROSITE profilePS5103215.7644097IPR001471AP2/ERF domain
SMARTSM003808.1E-1140103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-144098IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-29125227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-25132227IPR015300DNA-binding pseudobarrel domain
CDDcd100177.57E-22133226No hitNo description
SMARTSM010191.3E-17134236IPR003340B3 DNA binding domain
PfamPF023621.5E-23134229IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588134249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTETETFLPP KKRMRLNDEP EKAQVVTSAK KTVAVPGNVK YKGVFQLQNG HWGVQIYTDQ  60
KRIWLGTFKS AVEAAMAYDS ASIKLRRFDV NSYRNFPRSD VTIHEPEFQD RFTTELRGEV  120
DQESKKGFSC TELFQKELTP SDVGKLNRLV IPKRYAVNYM PCISNKEKEE GETVEGVEIV  180
FYDRELRKRK FRYCYWKSSQ SFVITSGWKS FVREKKLKEK DVISFYTCYV KTLEGQINNF  240
LMIDVHYSSD NGSVVPEEAN MTVHDSSEEG MKTEKFVSSK LKDEETKTEE NKGSFMLFGV  300
RIQCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2413322513100DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182188DRELRKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g083210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463344.11e-175PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-147RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLD7KGR61e-156D7KGR6_ARALL; Uncharacterized protein
STRINGXP_010463344.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-142RAV family protein