PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g053560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 664aa    MW: 71469.7 Da    PI: 6.9741
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g053560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.76.8e-41602242121
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                     ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++       
  Csa05g053560.1  60 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpsksvpl 154
                     789*************************************************************9999988887888888888555556666667 PP

             TCP  89 .....................................kaaksaakskksqksaasalnlakesrakarar 121
                                                          ++ +++++++++q++ ++  +  + sr++ r+ 
  Csa05g053560.1 155 ygalglthhhqhqqhqfdeqggafaaaahatpllgfhHHLQQHHHHHQNQAPVETIPDGENYSRKRYRSV 224
                     7766666665556666677777777766666666665555555555555555555555555555444444 PP

2TCP131.58.3e-413194832121
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                     ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++       
  Csa05g053560.1 319 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpsksvpl 413
                     789*************************************************************9999988887888888888555556666667 PP

             TCP  89 .....................................kaaksaakskksqksaasalnlakesrakarar 121
                                                          ++ +++++++++q++ ++  +  + sr++ r+ 
  Csa05g053560.1 414 ygalglthhhqhqqhqfdeqggafaaaahatpllgfhHHLQQHHHHHQNQAPVETIPDGENYSRKRYRSV 483
                     7766666666566666777777777776666666665555555555555555555555555555444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.6E-4165231IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41166120IPR017887Transcription factor TCP subgroup
PfamPF036346.7E-41324490IPR005333Transcription factor, TCP
PROSITE profilePS5136928.411325379IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MDLSDIRNNN DTAAAVTGLG GGARQLVDAS LTIVPRSTPL EDSTLSTTTT TTTTSAVAAT  60
TTKRSTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAIVAA  120
TGTGTIPANF STLSVSLRSS GSTLSAPPSK SVPLYGALGL THHHQHQQHQ FDEQGGAFAA  180
AAHATPLLGF HHHLQQHHHH HQNQAPVETI PDGENYSRKR YRSVDLSKED DDDRKQNESK  240
SLKESETPDP AAAPMWAVAP TTSRSSGGNT FWMLPVPPGG GARQLVDASL TIVPRSTPLE  300
DSTLSTTTTT TTTSAVAATT TKRSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS  360
DGETIEWLLQ QAEPAIVAAT GTGTIPANFS TLSVSLRSSG STLSAPPSKS VPLYGALGLT  420
HHHQHQQHQF DEQGGAFAAA AHATPLLGFH HHLQQHHHHH QNQAPVETIP DGENYSRKRY  480
RSVDLSKEDD DDRKQNESKS LKESETPDPA AAPMWAVAPT TSRSSGGNTF WMLPVPPGNQ  540
MESSSNNNNN TAGHRAPMWP FVNSAGAGAA THFMAGTWFS FPMDQYRGSP LQLGSFVAQP  600
QPTQNLGLSM PDSNLGMLAA LNAAYSRGGN ENGNAEQAVE HQEKPQQSEH DEECREENSN  660
SSE*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g053560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0791311e-111AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence.
GenBankAC0796041e-111AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence.
GenBankAY0813441e-111AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds.
GenBankBT0084931e-111BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds.
GenBankCP0026841e-111CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511084.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5180.0TCP8_ARATH; Transcription factor TCP8
TrEMBLR0GHN80.0R0GHN8_9BRAS; Uncharacterized protein
STRINGXP_010511084.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-164TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]