PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g038530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 288aa    MW: 31148.7 Da    PI: 7.7991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g038530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045115137123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++Fs+   L  H  +H
  Csa05g038530.1 115 YECKTCNRTFSSFQALGGHRASH 137
                     99**********99999998887 PP

2zf-C2H213.30.00024191213123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  Csa05g038530.1 191 HECSICGSEFTSGQALGGHMRRH 213
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.22E-9114137No hitNo description
PfamPF139121.0E-12114139IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.99115142IPR007087Zinc finger, C2H2
SMARTSM003550.063115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576677.22E-9186213No hitNo description
PfamPF139121.6E-11190214IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743191213IPR007087Zinc finger, C2H2
SMARTSM003550.019191213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF VVTTATTVTS TSSSAGGSGG RAVSDEYNSA  60
VSSPVTTTDC TQEEEDMAIC LIMLARGTVL PSPDLKNSRK IHQKISSEDS SFYVYECKTC  120
NRTFSSFQAL GGHRASHKKP RTSTDEKTRS PLMQPKSSAS EEGQNSPFKV SGSALASQAS  180
NIIINKANKV HECSICGSEF TSGQALGGHM RRHRTAITTV SPVAATAEVS RNSTEEETEI  240
NMSRSMEQQR KYLPLDLNLP APEDDLRESK FQGIVFSATP ALIDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062020.0AC006202.4 Arabidopsis thaliana chromosome 2 clone T3B23 map mi54, complete sequence.
GenBankAC0058510.0AC005851.3 Arabidopsis thaliana chromosome 2 clone F24D13 map B68, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankAK2298120.0AK229812.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-88-O10.
GenBankAK1754930.0AK175493.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-92-D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510676.10.0PREDICTED: zinc finger protein ZAT5
SwissprotQ681X40.0ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLD7LIE11e-178D7LIE1_ARALL; Putative uncharacterized protein
STRINGAT2G28200.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-179C2H2 family protein