PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g033460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 208aa    MW: 23708.1 Da    PI: 10.4169
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g033460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.3e-103563892
                    EEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3 38 ledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefel 92
                    +  ++g +Wev++  +k+++ y+++ + W++Fv++n L  ++ + F+++g+++f  
  Csa05g033460.1  3 ISVPWGSTWEVRI--SKNPRFYFMEkSEWEKFVRDNSLGRNELLCFTHKGKMNFGV 56
                    55689********..******6655388*******************999887744 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.02E-8158No hitNo description
PROSITE profilePS5086311.166162IPR003340B3 DNA binding domain
PfamPF023623.6E-8256IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-10359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-9660IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKISVPWGST WEVRISKNPR FYFMEKSEWE KFVRDNSLGR NELLCFTHKG KMNFGVNIMM  60
QIGKEMFQPP QARDFLASSS RFKTEQDDKT EEVVVSFEVG ARVPRTAAGS NGGGMYKRKL  120
NLGEKKAEES QKNTKRSERA FSIRRDHAGA SSSSVAGFSV VISKSYLIYL RILTSAAKDY  180
MPRVKSMVKI HHPDEKSSWN VVLFYNE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491618.11e-111PREDICTED: B3 domain-containing protein REM23-like
RefseqXP_010491619.11e-111PREDICTED: B3 domain-containing protein REM23-like
SwissprotQ9LXE12e-70REM23_ARATH; B3 domain-containing protein REM23
TrEMBLR0FG332e-92R0FG33_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0006_8792e-86(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.19e-64B3 family protein