PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g030320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 352aa    MW: 39181.1 Da    PI: 7.0315
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g030320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.81.9e-3426130189
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg.. 88 
                     a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l   +++++++      +++s +   + ++++  
  Csa05g030320.1  26 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLEIAETTTSTHQepvttKPGSPNLVFQRENNDqt 120
                     589*********************************************************98777444442221122222222222221111122 PP

             TCP  89 .........k 89 
                              +
  Csa05g030320.1 121 qfvaanldpE 130
                     2333334441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3127102IPR005333Transcription factor, TCP
PROSITE profilePS5136932.2972987IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV  60
QDRLGYDRPS KAVDWLIKKA KTAIDKLEIA ETTTSTHQEP VTTKPGSPNL VFQRENNDQT  120
QFVAANLDPE DAMKTFFPAT TTTSGGGTNM NFQNYPHHDD DNIVSRRTTT TPPNLSQDLG  180
LSLHPFQGNN NAVVVPETNS FTTTHFEPFG RISGWNHHDL TMTSSSSSEQ QEEERSNGGF  240
MVNHQHQPSM MTLLNTQQQQ VFLGVQQQQQ QRGTLQSSLF PHSFRSWDHQ TTPDHHHHHN  300
QVSPVMFASP SQFGSHGMMM MQGLSFPNTT RLLHGEEATQ PNSSSSQNSH L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-223487154Putative transcription factor PCF6
5zkt_B4e-223487154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g030320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053110.0AC005311.3 Arabidopsis thaliana chromosome 2 clone T16B12 map m283, complete sequence.
GenBankAY0599450.0AY059945.1 Arabidopsis thaliana Unknown protein (At2g31070; T16B12.12) mRNA, complete cds.
GenBankBT0011940.0BT001194.1 Arabidopsis thaliana Unknown protein (At2g31070) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510246.10.0PREDICTED: transcription factor TCP10
SwissprotO822770.0TCP10_ARATH; Transcription factor TCP10
TrEMBLD7LCY30.0D7LCY3_ARALL; Uncharacterized protein
STRINGXP_010510246.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-159TCP domain protein 10
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]