PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g021470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 70aa    MW: 8185.46 Da    PI: 11.3215
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g021470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP119.61.5e-371671177
                    -TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP 11 lseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                    +s+ak+yh+rhkvCe h+kap v +sgl+qrfCqqCsrfhel efD +krsCrrrLa+hnerrrk++
  Csa05g021470.1  1 MSKAKQYHKRHKVCESHAKAPIVRISGLHQRFCQQCSRFHELGEFDLAKRSCRRRLAGHNERRRKSA 67
                    799**************************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114128.085166IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-32168IPR004333Transcription factor, SBP-box
PfamPF031101.3E-28165IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.5E-26153IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MSKAKQYHKR HKVCESHAKA PIVRISGLHQ RFCQQCSRFH ELGEFDLAKR SCRRRLAGHN  60
ERRRKSAID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-311652084squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0054434e-85BT005443.1 Arabidopsis thaliana clone U50647 putative squamosa-promoter binding protein (At2g33810) mRNA, complete cds.
GenBankAK1181794e-85AK118179.1 Arabidopsis thaliana At2g33810 mRNA for putative squamosa-promoter binding protein, complete cds, clone: RAFL19-50-A02.
GenBankY094274e-85Y09427.1 A.thaliana mRNA for squamosa-promoter binding protein like 3.
GenBankAJ2429594e-85AJ242959.1 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 3 (SPL3 gene).
GenBankAJ0116334e-85AJ011633.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509826.14e-45PREDICTED: squamosa promoter-binding-like protein 3
SwissprotP930156e-39SPL3_ARATH; Squamosa promoter-binding-like protein 3
TrEMBLR0HES94e-40R0HES9_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.4__1394__AT2G33810.11e-37(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.14e-40squamosa promoter binding protein-like 3