PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g021440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 627aa    MW: 68493 Da    PI: 6.87
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g021440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-06133153526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     lC+ffa+ G+C  G +CkF H+
  Csa05g021440.1 133 LCKFFAK-GWCFNGVSCKFLHV 153
                     8******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0081128154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6128152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4133154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004133155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MSDSDMDIDD DEVEQKVQVH TIGGESKPIQ APNPQNALIY EVGKFITTVT ELKVLYFVSV  60
GNSFVHSNSS HVDVKRHSVT TPSNEQANII KEQAFAQDNG TLSRFPAPGI TPNSFFPAAG  120
EGNEPEQKRA AHLCKFFAKG WCFNGVSCKF LHVKENSNCT SQQQPENNMA GSSYIQSDVE  180
RRISNSIRVS HLMENGVTPS HTREDLSFVN PPGSQRVFSS MSFVNPPGSQ RVFPFNNEMR  240
FLPSSENIGR ESLQQTCGAA FTDNRSLVIN NSNSFTLRSS FVHHEHRSPI SSYLKPDIGS  300
SGPAWTGSLS SSVASVPMNE GASTVANFKK EDNIYGSRSL PTLQESQAAV SSEKGAAGNT  360
TSSRKKVSSD DWEPSEPFKA SFTIPPYILP SSDALYDPFT DIENLGDRSL NASLSSKGEQ  420
ARKISRQQKD GDSGSGTQAR ECKNDDKSSS CSQNQHQESV ARRSLEAHGV VEGVATSVVD  480
QNDTTTPSKE ISSVAAAENR VVLKRSKPAG HDAWHRSDGS SYKKTLKPDE IDGEVRSDAE  540
IKVMRQFRTA VVETVKEMLK PLWREGRLTK DVHNMIVKKA AEKVVSAAVQ FHQVPTDTGS  600
VDQYLGLSAT KIVKLVEGYV EKYGKP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g021440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288660.0AK228866.1 Arabidopsis thaliana mRNA for zinc finger (CCCH type) protein - like, clone: RAFL16-19-E15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509823.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLR0HRT60.0R0HRT6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010509823.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]