PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g009870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 282aa    MW: 31232.4 Da    PI: 8.5813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g009870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029215237223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg  Fs+  +L+ H  + H
  Csa05g009870.1 215 VCPQCGAKFSSVTSLVEHVEKtH 237
                     6*****************99888 PP

2zf-C2H2218.9e-07253275223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C+k F+++ +L++Hi + H
  Csa05g009870.1 253 VCPKCSKGFRDPVDLVNHIERdH 275
                     7******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.28E-12455No hitNo description
PROSITE profilePS510397.7741056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.1E-101152IPR000058Zinc finger, AN1-type
PfamPF014283.9E-131349IPR000058Zinc finger, AN1-type
SMARTSM001541.4E-61352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.3E-1091142IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.07E-893141No hitNo description
PROSITE profilePS510398.2398147IPR000058Zinc finger, AN1-type
PfamPF014283.2E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.0068101142IPR000058Zinc finger, AN1-type
SMARTSM003550.01214237IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45214242IPR007087Zinc finger, C2H2
SuperFamilySSF576675.96E-5215271No hitNo description
PROSITE patternPS000280216237IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-4218237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.141252280IPR007087Zinc finger, C2H2
SMARTSM003556.4252275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280254275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDVCKQ IDFLPFTCDR CLQVFCLDHR SYMKHTCPKG DREDLTVVIC  60
PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKATKKKK CPVPRCKEQL TFSNTIKCRD  120
CNIDHCLKHR FGPDHSCPGP RKLPFMGFLS SSSSSNSRKE AKTTRPNKAS ASSSSTSRWS  180
NLLSSAEGGI SRLGNDISQK LQFSSSSSND GIIEVCPQCG AKFSSVTSLV EHVEKTHERN  240
KKQSHGSKVT VDVCPKCSKG FRDPVDLVNH IERDHRGTSK A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0966200.0AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankAY0652720.0AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508672.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ421e-179SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLR0HR081e-178R0HR08_9BRAS; Uncharacterized protein
STRINGAT2G41835.11e-177(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-170C2H2 family protein