PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g003610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 355aa    MW: 37525.3 Da    PI: 10.1774
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g003610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.96.4e-3766153288
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                     + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++  +++ +  + ++  +
  Csa05g003610.1  66 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLKIPTTTNADS 153
                     57999***********************************************************888884442111111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-3071150IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32772126IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MATYHQKQEE VGVKDQTLSR AVGVRNVETS RPFQVNPTVS LEPKPEPVMQ MQAPLSLAPP  60
SSTGPPLKRA STKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE TIRWLLENAE  120
PAIIAATGTG TVPAIAMSVN GTLKIPTTTN ADSDLGDNPM KKKRKRPSNS EYIDINDAVS  180
ASSGLAPITT TTTTTTMIQQ PPAAPSTTVA QQHMYPMWAI PSNAVIPTVG AFFLVPQIAG  240
PSNQPQLLAF PAAAAAPPSS YVAAVQQVSS LARPPPSHQV YPGSGVSDAS GSNSSRTTSA  300
MAPSSSSGIK TGGSSSSVTT TPTHTLRDFS LEIYEKQELH QFMSTTTTTR SSNH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g003610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0036801e-179AC003680.3 Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete sequence.
GenBankAF3706061e-179AF370606.1 Arabidopsis thaliana putative PCF2-like DNA binding protein (At2g45680; F17K2.21) mRNA, complete cds.
GenBankAK2215991e-179AK221599.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-89-L23.
GenBankAK2304511e-179AK230451.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-49-E05.
GenBankAY0562141e-179AY056214.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds.
GenBankAY1139811e-179AY113981.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds.
GenBankCP0026851e-179CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508127.10.0PREDICTED: transcription factor TCP9-like
SwissprotO646471e-173TCP9_ARATH; Transcription factor TCP9
TrEMBLR0HGG10.0R0HGG1_9BRAS; Uncharacterized protein
STRINGXP_010508128.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-152TCP family protein