PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g054670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 352aa    MW: 39193 Da    PI: 4.6519
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g054670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1785134255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr++  +g+WvAeIr+p   gk  r +lg+f t  eAa a+++a+k+++g
  Csa04g054670.1  85 EYRGVRQRT-WGKWVAEIREP---GKGGRLWLGTFSTSLEAALAYDEAAKAMYG 134
                     69****999.**********9...4348***********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.44E-2984143No hitNo description
PROSITE profilePS5103220.75885142IPR001471AP2/ERF domain
SMARTSM003802.1E-3385148IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1985143IPR016177DNA-binding domain
PfamPF008471.8E-1285134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2885143IPR001471AP2/ERF domain
PRINTSPR003676.1E-98697IPR001471AP2/ERF domain
PRINTSPR003676.1E-9108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGVLEQVANL ASMHFDSPRK RKSRGERERD VAEILRKWRE YNQLTETDSS YIDGGVPKPI  60
RKAPTKGSRK GCMRGKGGPE NGNCEYRGVR QRTWGKWVAE IREPGKGGRL WLGTFSTSLE  120
AALAYDEAAK AMYGYSARLN LPHFTTNGSS STAATVSGSV TAFSDKSEVC ARYDTNVISQ  180
AKLEGSSDEY VTFDSSQCIE EKLNVKEEER EPNSVDAFGT GQESKKETLD DWLMGNGNDQ  240
APFRFDVDET FDISELLGIR DDNNASGQDT MQCQVNRKPN FSDQMQFQDA NLPESLNPME  300
IANPEVDYGY HYTQQSEMEN NGIGLDHRRF QDLDVHEDLD FGGGKDVHGA T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1786142360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g054670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505763.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
SwissprotQ8LFR21e-163DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLR0FWR90.0R0FWR9_9BRAS; Uncharacterized protein
STRINGXP_010505763.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-135ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]