PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g047100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 258aa    MW: 29603.7 Da    PI: 5.3894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g047100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.54.3e-07123167655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r RR+ri ++ +eL +l+P       +K + ae+ + A +Y+k Lq
  Csa04g047100.1 123 SIAARERRRRIADKTHELGKLIPGG-----QKQNTAEMFQSAAKYVKFLQ 167
                     577899*****************96.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-10115177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.303117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-9120173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-5123167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-8123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSMDCLSHFF NYDPPVQLQD CFLPDMDMII PESDSFFLES QPQLQFHQPL FQEEAPSQTY  60
FDPFCDQFLS PQEISLPNPK TEIFNETHDL DSFLPTPKRQ KLVNSSYHCR GDDTKKPTLS  120
SQSIAARERR RRIADKTHEL GKLIPGGQKQ NTAEMFQSAA KYVKFLQSQV GILQLMQTTK  180
KCFLTSWVNL LTQGSSNVQS ETQVLLESQA IQEKLSTEEV CLVPCEMVQD LTTQETIRRN  240
PKIYREINKL LSRDLAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g047100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042381e-125AC004238.3 Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete sequence.
GenBankAY2344121e-125AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds.
GenBankCP0026851e-125CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516643.11e-148PREDICTED: transcription factor bHLH53-like
SwissprotQ84RD01e-135BH053_ARATH; Transcription factor bHLH53
TrEMBLD7LH481e-133D7LH48_ARALL; Predicted protein
STRINGXP_010516643.11e-147(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-124bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]