PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g026010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 195aa    MW: 21926.4 Da    PI: 5.5162
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g026010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.14.9e-2881535102
             TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................. 65 
                     +++ +++h kvggRdRR+Rl+ ++a ++F L++eLGf +d++t+ WLl++a+pai ++tg                                   
  Csa04g026010.1   8 TRTPKDRHLKVGGRDRRIRLPPSIAPKLFSLTEELGFQSDGETVGWLLRNAEPAIFAATGHgvstttndvihssdkifhnyysncgnfsniingn 102
                     56789********************************************************7766555555544444444444444444444444 PP

             TCP  66 ssssaseceaesssssasnsssg...................................kaaksaakskksqk 102
                     +                     +                                    + k++ +  +sq+
  Csa04g026010.1 103 C---------------------SytidgdnwtgintfhhemvfpettmkehaasstfpVKDKEDVSDMSSQT 153
                     0.....................04444444444444443333343322222222222222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2411142IPR005333Transcription factor, TCP
PROSITE profilePS5136924.0131165IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDNMEKATRT PKDRHLKVGG RDRRIRLPPS IAPKLFSLTE ELGFQSDGET VGWLLRNAEP  60
AIFAATGHGV STTTNDVIHS SDKIFHNYYS NCGNFSNIIN GNCSYTIDGD NWTGINTFHH  120
EMVFPETTMK EHAASSTFPV KDKEDVSDMS SQTQPAMLPP LMHHQQQQEQ EPQPQFELGK  180
VEMAADEKRY VWSE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503166.11e-148PREDICTED: transcription factor TCP16-like
SwissprotQ9M1U47e-49TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL84e-64D7LNL8_ARALL; Putative uncharacterized protein
STRINGscaffold_501366.11e-63(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.12e-50TCP domain protein 16