PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g025970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 145aa    MW: 16315.5 Da    PI: 10.6803
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g025970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP683.1e-2121791566
             TCP 15 vggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......s 66
                       R RR+ l+++ a ++F+L++eLGf++d++t+ WLl++a+pai ++ g+       +
  Csa04g025970.1 21 SKDRNRRIPLPLSYASQVFQLTQELGFKSDGETVGWLLRNAEPAILAARGQgvnttsiG 79
                    345889*******************************************9955444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136913.9011268IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-172382IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDSRNKQNNT ERKARSTPKS SKDRNRRIPL PLSYASQVFQ LTQELGFKSD GETVGWLLRN  60
AEPAILAARG QGVNTTSIGF IHSYLNIRNP SNIFYRNVRN ITVDNSVHCA DTSGVVCHRR  120
ITNHGQLKPA ETFEKTLFML LIEK*
Functional Description ? help Back to Top
Source Description
UniProtRequired during early processes in pollen development. {ECO:0000269|PubMed:16786299}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g025970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292943.28e-49transcription factor TCP16
SwissprotQ9M1U45e-24TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL14e-47D7LNL1_ARALL; Uncharacterized protein
STRINGCagra.24093s0001.1.p3e-48(Capsella grandiflora)
STRINGscaffold_501359.16e-48(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16163510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.12e-26TCP domain protein 16
Publications ? help Back to Top
  1. Uberti-Manassero NG,Coscueta ER,Gonzalez DH
    Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems.
    Plant Physiol. Biochem., 2016. 108: p. 57-62
    [PMID:27404135]