PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g025960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 192aa    MW: 21022.1 Da    PI: 5.8562
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g025960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP82.11.4e-25161181089
             TCP  10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.......eaesssssasnsssg.... 88 
                     k  T+  gR RR+Rl+++ca ++F+L++eLGf++d++t+ WLl+ a+p i ++tg      s +++s+c          + s++++         
  Csa04g025960.1  16 KTPTSSRGRNRRIRLPVSCASQVFKLTQELGFKTDGETVGWLLRIAEPTILAATGHgvnttSDDTSSDCihpyiniH--NTSNMNQ----Lsfgn 104
                     77799***************************************************998874444455554443211..1111111....01112 PP

             TCP  89 .............k 89 
                                  +
  Csa04g025960.1 105 nctidnsvhyadtS 118
                     23333333322220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136914.6361268IPR017887Transcription factor TCP subgroup
PfamPF036347.8E-2116122IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVLRNNKNNI GGKARKTPTS SRGRNRRIRL PVSCASQVFK LTQELGFKTD GETVGWLLRI  60
AEPTILAATG HGVNTTSDDT SSDCIHPYIN IHNTSNMNQL SFGNNCTIDN SVHYADTSAV  120
VSQAHQRENI TGHHGLVSPA ATMSTDYGST SFPENSMPQQ QPQPLDDEFD EEEEMGTAAQ  180
TYVNPENTIW R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g025960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503162.11e-143PREDICTED: transcription factor TCP16-like
TrEMBLD7LNL11e-63D7LNL1_ARALL; Uncharacterized protein
STRINGXP_010503162.11e-143(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16163510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.12e-27TCP domain protein 16