PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g009900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 353aa    MW: 39352.4 Da    PI: 9.897
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g009900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.51.6e-1362110155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+ +++g
  Csa04g009900.1  62 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAAHRFRG 110
                     689***9788.8*********3.....5************************998 PP

2B399.22.6e-31193302199
                     EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                     f+k+ tpsdv+k++rlv+pk+ ae+h             g  + +++ l++ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + F
  Csa04g009900.1 193 FEKTVTPSDVGKLNRLVIPKHQAEKHfplalggvdndnnG--SVKGMLLSFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLICF 285
                     99*****************************999888533..34899************************************************ PP

                     EE-SSSEE..EEEEE-S CS
              B3  83 kldgrsefelvvkvfrk 99 
                     ++++ ++ +l++++ +k
  Csa04g009900.1 286 RRSNGQDDKLFIGWKSK 302
                     *9877999999999776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.9E-962110IPR001471AP2/ERF domain
CDDcd000181.46E-2662120No hitNo description
SuperFamilySSF541711.57E-1762118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-2163119IPR001471AP2/ERF domain
PROSITE profilePS5103220.38963118IPR001471AP2/ERF domain
SMARTSM003802.0E-2963124IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.1E-38187306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-30189302IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-26192290No hitNo description
PfamPF023621.3E-27193302IPR003340B3 DNA binding domain
SMARTSM010198.5E-25193303IPR003340B3 DNA binding domain
PROSITE profilePS5086313.451193303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDTMSSGDES STTTDSIHTP IKIPARKSPS PAGLLYRMGS GTSVVLDSDN GLEAESRKLP  60
SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAARA YDVAAHRFRG RDAVTNFKET  120
TLVNGNDGGD EDEVDFLNAH SKSEIVDMLR KHTYKEELEQ RKRKRNGNGN KTMGFGSVTA  180
AVITGFKTSK LLFEKTVTPS DVGKLNRLVI PKHQAEKHFP LALGGVDNDN NGSVKGMLLS  240
FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKRLCAG DLICFRRSNG QDDKLFIGWK  300
SKSGSESVSG SDRVVRLFGV DICFNDAAVA VKKEENDMFV SLRCNKKKQR AM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5819230613121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00031PBMTransfer from AT3G25730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g009900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502448.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor ARF14-like
SwissprotQ9LS060.0RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLD7LQT80.0D7LQT8_ARALL; Uncharacterized protein
STRINGXP_010502448.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-174ethylene response DNA binding factor 3