PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04655s010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 160aa    MW: 17912.7 Da    PI: 4.5265
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04655s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP51.25e-1611153199
             TCP  31 rfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssaseceaesssssasnsssg............ 88 
                     ++F L+deLGf +d++t+ WLl++a+pai ++tg                          +                                  
  Csa04655s010.1   1 QLFNLTDELGFQTDGETVGWLLRNAEPAIFAATGHgvsttpndvihssnnnfhnyysncnN---------------------Ytihgncsytidg 74 
                     68*********************************77544444444444444444333330.....................0344444444445 PP

             TCP  89 ..............................kaaksaakskk 99 
                                                    + k++ +  +
  Csa04655s010.1  75 dnwtgvntvhhemvfpvsimkehaasscfpVKDKEDVSDMS 115
                     55555555554444444333333333333322222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136915.945132IPR017887Transcription factor TCP subgroup
PfamPF036345.7E-131108IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
QLFNLTDELG FQTDGETVGW LLRNAEPAIF AATGHGVSTT PNDVIHSSNN NFHNYYSNCN  60
NYTIHGNCSY TIDGDNWTGV NTVHHEMVFP VSIMKEHAAS SCFPVKDKED VSDMSSQTQP  120
AMLPPLIHHQ QQQEQEPQPQ FELGKVEMAA DEKRYVWSE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495849.11e-119PREDICTED: transcription factor TCP16-like
SwissprotQ9M1U42e-28TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL83e-42D7LNL8_ARALL; Putative uncharacterized protein
STRINGscaffold_501366.18e-42(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.11e-28TCP domain protein 16